Koren

Koren A. Nishina, PhD

Castle Pines, CO 80108

Skilled data scientist who blends data analytics and visualization skills while leveraging a rigorous scientific background for advancements in healthcare and learning. Able to leverage scientific skill set with data analysis and visualization skills to build better software tools, resulting in accelerated scientific discovery and innovation.


Education


Cornell University
Certificate in Psychology of Leadership
Cornell University
Certificate in Change Management
Cornell University
Certificate in Machine Learning
Cornell University
Certificate in Product Management for Engineers
Udacity
Nanodegree in Data Science
UC Berkeley Extension
Certificate in Data Analytics and Visualization
UC Berkeley Extension
Certificate in Business Administration
Dartmouth Medical School
Ph.D. in Biochemistry
M.I.T.
B.S. in Biology, Minor in Music

Professional Experience


Promega-Madison, WI
October 2020-Present
Product Manager, Instrumentation Software

Managing software product strategy and developing production-grade analysis engines and predictive models for scientific data applications.

  • Developed and trained three predictive models—one k-Nearest Neighbors (kNN) and two deep learning convolutional neural network models with PyTorch—using simulated datasets to prototype future-gazing products and capabilities.
  • Bridge communication between business stakeholders and software developers, translating life sciences and software domain knowledge into implementable tasks.
  • Successfully launched a web-based cloud product for integrated scientific instruments with applications that enabled end-to-end data capture, analysis, and visualizations.
  • Developed four production-ready analysis engines to process complex datasets, reducing computation time from multiple hours to seconds.
  • Assisted in authoring detailed documentation and test plans that supported the launch of two scientific instruments (Spectrum CE and Galaxy)


Specific Diagnostics-Mountain View, CA
October 2019-July 2020
Data Scientist

Designed and implemented scalable data processing pipelines to streamline analysis of data.

  • Created a high-throughput drug plate analysis pipeline using Pandas, Numpy, and ExcelWriter that reduced processing time from 20 minutes per plate to seconds.
  • Automated conversion of PDF-based reports to structured CSV data with Tabula, eliminating manual entry and improving reproducibility.
  • Generated code using Pandas, Numpy, ExcelWriter, and Matplotlib that converted raw data into customized report structure with various statistical outputs, resulting in an automated process that takes a few minutes instead of a handful of hours.
  • Refactored code base that produces statistics that highlights differences between different bacterial strains and their susceptibility with various antibiotics.


University of California, Berkeley Extension—Belmont, CA
Aug 2018-Jun 2020
Teaching Assistant, Data Analytics & Visualization Certification Program (Evening Program)

Actively mentored students for success in a fast-paced data analytics program, fostering industry readiness for data-focused careers.

  • Provided instruction on technologies in Python, SQL/noSQL, HTML/CSS/JavaScript, D3.js, Tableau, VBA, Git, APIs, and Machine Learning.
  • Troubleshoot code and mentored students on organization, visualization, and interpretation of data to make impactful conclusions.


Promega—Sunnyvale, CA
Dec 2016-Oct 2017
Systems Engineer

Designed, performed and analyzed complex sets of capillary electrophoresis (CE) data produced by the Spectrum platform to determine reliability of the system.

  • Collaborated across engineering and R&D teams to identify, diagnose, and resolve system issues for the Spectrum platform at various stages of product development.
  • Conducted root-cause failure analyses of instrumentation systems and presented results that informed design improvements and prototype optimizations.
  • Executed proof-of-concept experiments that led to the development of a new analytical device.


LakePharma—Belmont, CA
Aug 2015- Dec 2016
Scientist

Successfully developed customized biofunctional assays that include cell-based reporter assays, lysate-based colorimetric assays, ELISAs, and FACS-based assays (Accuri C6, IntelliCyt iQue).

  • Developed and optimized the standard operating procedure for hybridoma electrofusion, associated media conditions, and assays for high-throughput hybridoma characterization/screening.
  • Designed and executed campaigns for oncology targets for antibody selection and therapeutic use.
  • Completed the molecular construction of 148 vectors that express target proteins utilizing a combination of techniques (gene synthesis, PCR, ligation, homologous recombination).
  • Streamlined the dual-expression vector and standard construction procedure to reduce cloning time from one month to one week.